5Z7G Signaling Protein date Jan 28, 2018
title Crystal Structure Of Tax1bp1 Skich Region In Complex With Na
authors L.F.Pan, T.Fu, J.P.Liu, X.Q.Xie, Y.L.Wang, S.C.Hu
compound source
Molecule: Tax1-Binding Protein 1
Chain: A, B
Synonym: Traf6-Binding Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tax1bp1, T6bp, Pro0105
Expression_system: Enterobacteria Phage L1
Expression_system_taxid: 268588

Molecule: 5-Azacytidine-Induced Protein 2
Chain: C, D
Synonym: Nf-Kappa-B-Activating Kinase-Associated Protein 1, Associated Protein 1,Tilp;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Azi2, Nap1, Tbkbp2
Expression_system: Enterobacteria Phage L1
Expression_system_taxid: 268588
symmetry Space Group: P 63
R_factor 0.187 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.487 118.487 64.344 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL enzyme
Primary referenceMechanistic insights into the interactions of NAP1 with the SKICH domains of NDP52 and TAX1BP1., Fu T, Liu J, Wang Y, Xie X, Hu S, Pan L, Proc Natl Acad Sci U S A. 2018 Dec 11;115(50):E11651-E11660. doi:, 10.1073/pnas.1811421115. Epub 2018 Nov 20. PMID:30459273
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (5z7g.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 5Z7G
  • CSU: Contacts of Structural Units for 5Z7G
  • Structure Factors (525 Kb)
  • Retrieve 5Z7G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Z7G from S2C, [Save to disk]
  • View 5Z7G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5Z7G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5z7g_D] [5z7g_B] [5z7g_A] [5z7g_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5Z7G
  • Community annotation for 5Z7G at PDBWiki (http://pdbwiki.org)

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