5ZBQ Signaling Protein date Feb 12, 2018
title The Crystal Structure Of Human Neuropeptide Y Y1 Receptor Wi Mk299
authors Z.Yang, S.Han, Q.Zhao, B.Wu
compound source
Molecule: Neuropeptide Y Receptor Type 1,T4 Lysozyme
Chain: A
Fragment: Unp Residues 2-358,Unp Residues 2-161
Synonym: Npy1-R,Lysis Protein,Lysozyme,Muramidase
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage Rb5
Organism_common: Human
Organism_taxid: 9606, 697289
Gene: Npy1r, Npyr, Npyy1, E, Rb55_p125
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1 21 1
R_factor 0.225 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.840 100.680 83.160 90.00 98.76 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • pancreatic polypeptide recep...
  • neuropeptide Y receptor acti...


  • Primary referenceStructural basis of ligand binding modes at the neuropeptide Y Y1 receptor., Yang Z, Han S, Keller M, Kaiser A, Bender BJ, Bosse M, Burkert K, Kogler LM, Wifling D, Bernhardt G, Plank N, Littmann T, Schmidt P, Yi C, Li B, Ye S, Zhang R, Xu B, Larhammar D, Stevens RC, Huster D, Meiler J, Zhao Q, Beck-Sickinger AG, Buschauer A, Wu B, Nature. 2018 Apr;556(7702):520-524. doi: 10.1038/s41586-018-0046-x. Epub 2018 Apr, 18. PMID:29670288
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (5zbq.pdb1.gz) 115 Kb
  • CSU: Contacts of Structural Units for 5ZBQ
  • Structure Factors (549 Kb)
  • Retrieve 5ZBQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZBQ from S2C, [Save to disk]
  • View 5ZBQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZBQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zbq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zbq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZBQ
  • Community annotation for 5ZBQ at PDBWiki (http://pdbwiki.org)

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