5ZBX	The crystal structure of the nucleosome containing histone H3.1 CATD(V76Q, K77D)	date
authors	Arimura, Y., Takagi, H., Kurumizaka, H.
compound		source
symmetry		R_factor R_Free 0.2493
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.58
ligand	CL, MN	enzyme
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism., Arimura Y, Tachiwana H, Takagi H, Hori T, Kimura H, Fukagawa T, Kurumizaka H, Nat Commun. 2019 Feb 4;10(1):576. doi: 10.1038/s41467-019-08314-x. PMID:30718488

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk] Biological Unit Coordinates (5zbx.pdb1.gz) 241 Kb LPC: Ligand-Protein Contacts for 5ZBX CSU: Contacts of Structural Units for 5ZBX Structure Factors (1507 Kb) Retrieve 5ZBX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ZBX from S2C, [Save to disk]

View 5ZBX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5ZBX

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 5zbx from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5zbx_H] [5zbx_C] [5zbx_E] [5zbx_I] [5zbx_F] [5zbx_B] [5zbx_A] [5zbx_G] [5zbx_J] [5zbx_D] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5ZBX

Community annotation for 5ZBX at PDBWiki (http://pdbwiki.org)

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