5ZBX	Dna Binding Protein Dna	date	Feb 13, 2018
title	The Crystal Structure Of The Nucleosome Containing Histone H Catd(V76q, K77d)
authors	Y.Arimura, H.Takagi, H.Kurumizaka
compound		source
Molecule: Histone H3.1,Histone H3-Like Centromeric Protein H3.1; Chain: A, E Synonym: Histone H3a,Histone H3b,Histone H3c,Histone H3 H3f,Histone H3h,Histone H3i,Histone H3j,Histone H3k,Hi H3l,Centromere Autoantigen A,Centromere Protein A,Cenp-A; Engineered: Yes Mutation: Yes Other_details: Chimera Protein H3catd, In Which Amino Acid 76-113 Of Human Histone H3.1 Were Replaced By The Correspon Acid Residues 75-114 Of Human Cenp-A.;		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h3a, H3fa, Hist1h3b, H3fl, Hist1h3c, H3fc, Hist1 H3fb, Hist1h3e, H3fd, Hist1h3f, H3fi, Hist1h3g, H3fh, Hist1 H3fk, Hist1h3i, H3ff, Hist1h3j, H3fj, Cenpa; Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph3.1 Catd
Molecule: Histone H4 Chain: B, F Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h4a, H4a, H4fa, Hist1h4b, H4i, H4fi, Hist1h4c, H4fg, Hist1h4d, H4b, H4fb, Hist1h4e, H4j, H4fj, Hist1h4f, H4fc, Hist1h4h, H4h, H4fh, Hist1h4i, H4m, H4fm, Hist1h4j, H4fe, Hist1h4k, H4d, H4fd, Hist1h4l, H4k, H4fk, Hist2h4a, H4f2, H4fn, Hist2h4, Hist2h4b, H4o, H4fo, Hist4h4; Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Jm109(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph4
Molecule: Histone H2a Type 1-Be Chain: C, G Synonym: Histone H2a.2,Histone H2aa,Histone H2am Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2ab, H2afm, Hist1h2ae, H2afa Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_plasmid: Ph2a
Molecule: Histone H2b Type 1-J Chain: D, H Synonym: Histone H2b.1,Histone H2b.R,H2br Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2bj, H2bfr Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
Molecule: Dna (146-Mer) Chain: I, J Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Escherichia Coli Dh5alpha Expression_system_taxid: 668369 Expression_system_strain: Dh5alpha Expression_system_vector_type: Plasmid
symmetry	Space Group: P 21 21 21	R_factor 0.213 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 99.543 109.003 170.136 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.58 Å
ligand	CL, MN	enzyme
Gene Ontology	Chain Function Process Component A, E C, G F, B H, D
Primary reference	The CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism., Arimura Y, Tachiwana H, Takagi H, Hori T, Kimura H, Fukagawa T, Kurumizaka H, Nat Commun. 2019 Feb 4;10(1):576. doi: 10.1038/s41467-019-08314-x. PMID:30718488

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk] Biological Unit Coordinates (5zbx.pdb1.gz) 241 Kb LPC: Ligand-Protein Contacts for 5ZBX CSU: Contacts of Structural Units for 5ZBX Structure Factors (1507 Kb) Retrieve 5ZBX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ZBX from S2C, [Save to disk]

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute Fold representative 5zbx from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5zbx_H] [5zbx_C] [5zbx_E] [5zbx_I] [5zbx_F] [5zbx_B] [5zbx_A] [5zbx_G] [5zbx_J] [5zbx_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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