5ZBX The crystal structure of the nucleosome containing histone H3.1 CATD(V76Q, K77D) date
authors Arimura, Y., Takagi, H., Kurumizaka, H.
compound source
symmetry
R_factor
R_Free 0.2493
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.58
ligand CL, MN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


C, G


F, B


H, D


Primary referenceThe CENP-A centromere targeting domain facilitates H4K20 monomethylation in the nucleosome by structural polymorphism., Arimura Y, Tachiwana H, Takagi H, Hori T, Kimura H, Fukagawa T, Kurumizaka H, Nat Commun. 2019 Feb 4;10(1):576. doi: 10.1038/s41467-019-08314-x. PMID:30718488
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (5zbx.pdb1.gz) 241 Kb
  • LPC: Ligand-Protein Contacts for 5ZBX
  • CSU: Contacts of Structural Units for 5ZBX
  • Structure Factors (1507 Kb)
  • Retrieve 5ZBX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZBX from S2C, [Save to disk]
  • View 5ZBX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZBX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zbx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zbx_H] [5zbx_C] [5zbx_E] [5zbx_I] [5zbx_F] [5zbx_B] [5zbx_A] [5zbx_G] [5zbx_J] [5zbx_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZBX
  • Community annotation for 5ZBX at PDBWiki (http://pdbwiki.org)

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