5ZBZ Hydrolase date Feb 14, 2018
title Crystal Structure Of The Dead Domain Of Human Eif4a With San
authors Y.Ding, L.Ding
compound source
Molecule: Eukaryotic Initiation Factor 4a-I
Chain: A
Fragment: Dead Domain
Synonym: Eif4a-I,Atp-Dependent Rna Helicase Eif4a-1
Ec: 3.6.4.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif4a1, Ddx2a, Eif4a
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmbp (Pmal-C2x Derived)
symmetry Space Group: C 1 2 1
R_factor 0.194 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.471 56.630 66.324 90.00 116.78 90.00
method X-Ray Diffractionresolution 1.31 Å
ligand MLI, MLY, SAU enzyme Hydrolase E.C.3.6.4.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (5zbz.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 5ZBZ
  • CSU: Contacts of Structural Units for 5ZBZ
  • Structure Factors (1830 Kb)
  • Retrieve 5ZBZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZBZ from S2C, [Save to disk]
  • View 5ZBZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZBZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zbz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZBZ
  • Community annotation for 5ZBZ at PDBWiki (http://pdbwiki.org)

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