5ZCO date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand AZI, CDL, CHD, CU, CUA, DMU, EDO, FME, HEA, MG, NA, PEK, PGV, PSC, SAC, TGL, TPO, UNX, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, N


C, P
  • cytochrome-c oxidase activit...
  • oxidoreduction-driven active...


    • D, Q


    E, R


    F, S


    H, U


    K, X


    M, Z


    O, B
  • cytochrome-c oxidase activit...


    • T, G


    V, I
  • cytochrome-c oxidase activit...


    • W, J


    Y, L


    Primary referenceX-ray structural analyses of azide-bound cytochrome c oxidases reveal that the H-pathway is critically important for the proton-pumping activity., Shimada A, Hatano K, Tadehara H, Yano N, Shinzawa-Itoh K, Yamashita E, Muramoto K, Tsukihara T, Yoshikawa S, J Biol Chem. 2018 Aug 3. pii: RA118.003123. doi: 10.1074/jbc.RA118.003123. PMID:30077971
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1349 Kb) [Save to disk]
  • Biological Unit Coordinates (5zco.pdb1.gz) 663 Kb
  • Biological Unit Coordinates (5zco.pdb2.gz) 668 Kb
  • LPC: Ligand-Protein Contacts for 5ZCO
  • CSU: Contacts of Structural Units for 5ZCO
  • Structure Factors (8545 Kb)
  • Retrieve 5ZCO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZCO from S2C, [Save to disk]
    • View 5ZCO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zco_A] [5zco_B] [5zco_C] [5zco_D] [5zco_E] [5zco_F] [5zco_G] [5zco_H] [5zco_I] [5zco_J] [5zco_K] [5zco_L] [5zco_M] [5zco_N] [5zco_O] [5zco_P] [5zco_Q] [5zco_R] [5zco_S] [5zco_T] [5zco_U] [5zco_V] [5zco_W] [5zco_X] [5zco_Y] [5zco_Z]
  • SWISS-PROT database:

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