5ZDH date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
K, F, O, B, G, L, D, I, N, C, J, H, A, M, E


a, W, X, b, R, Y, S, c, T, V, Q, d, Z, U, P


Primary referenceStructural insight into the assembly of the type II secretion system pilotin-secretin complex from enterotoxigenic Escherichia coli., Yin M, Yan Z, Li X, Nat Microbiol. 2018 May;3(5):581-587. doi: 10.1038/s41564-018-0148-0. Epub 2018, Apr 9. PMID:29632366
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1196 Kb) [Save to disk]
  • Biological Unit Coordinates (5zdh.pdb1.gz) 1182 Kb
  • CSU: Contacts of Structural Units for 5ZDH
  • Retrieve 5ZDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZDH from S2C, [Save to disk]
  • View 5ZDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zdh_Q] [5zdh_E] [5zdh_F] [5zdh_G] [5zdh_H] [5zdh_I] [5zdh_J] [5zdh_K] [5zdh_L] [5zdh_A] [5zdh_M] [5zdh_B] [5zdh_N] [5zdh_C] [5zdh_O] [5zdh_D] [5zdh_P] [5zdh_R] [5zdh_S] [5zdh_T] [5zdh_U] [5zdh_V] [5zdh_W] [5zdh_X] [5zdh_Y] [5zdh_Z] [5zdh_a] [5zdh_b] [5zdh_c] [5zdh_d]
  • SWISS-PROT database:

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