5ZDN date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CDP, GOL, MG enzyme
Primary referenceBiochemical and Structural Analysis of FomD That Catalyzes the Hydrolysis of Cytidylyl ( S)-2-Hydroxypropylphosphonate in Fosfomycin Biosynthesis., Sato S, Miyanaga A, Kim SY, Kuzuyama T, Kudo F, Eguchi T, Biochemistry. 2018 Aug 14;57(32):4858-4866. doi: 10.1021/acs.biochem.8b00690., Epub 2018 Jul 25. PMID:30010320
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5zdn.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (5zdn.pdb2.gz) 131 Kb
  • LPC: Ligand-Protein Contacts for 5ZDN
  • CSU: Contacts of Structural Units for 5ZDN
  • Structure Factors (394 Kb)
  • Retrieve 5ZDN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZDN from S2C, [Save to disk]
    • View 5ZDN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zdn_A]
  • SWISS-PROT database:

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