5ZE1	Dna Binding Protein	date	Feb 25, 2018
title	Hairpin Forming Complex, Rag12-Nicked 12rss23rss Complex I For 10 Min At 4'C
authors	M.S.Kim, W.Chuenchor, X.Chen, M.Gellert, W.Yang
compound		source
Molecule: Mouse Rag1 Chain: A, C Fragment: Unp Residues 384-1008 Synonym: Rag-1 Ec: 3.1.-.-,2.3.2.27 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Rag1 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t
Molecule: Mouse Rag2 Chain: B, D Fragment: Unp Residues 1-387 Synonym: Rag-2 Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Rag2, Rag-2 Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Het293t
Molecule: Hmgb1 A-B Box Chain: N Fragment: Unp Residues 1-163 Synonym: High Mobility Group Protein 1,Hmg-1 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Hmgb1, Hmg-1, Hmg1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna Chain: F Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna Chain: I Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna Chain: J Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna Chain: G Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna Chain: L Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna Chain: M Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1 21 1	R_factor 0.197 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 132.760 108.600 157.090 90.00 114.20 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	EDO, K, MN, ZN	enzyme	Hydrolase E.C.3.1 BRENDA
Gene Ontology	Chain Function Process Component A, C D, B N
Primary reference	Cracking the DNA Code for V(D)J Recombination., Kim MS, Chuenchor W, Chen X, Cui Y, Zhang X, Zhou ZH, Gellert M, Yang W, Mol Cell. 2018 Apr 19;70(2):358-370.e4. doi: 10.1016/j.molcel.2018.03.008. Epub, 2018 Apr 5. PMID:29628308

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (413 Kb) [Save to disk] Biological Unit Coordinates (5ze1.pdb1.gz) 216 Kb Biological Unit Coordinates (5ze1.pdb2.gz) 194 Kb LPC: Ligand-Protein Contacts for 5ZE1 CSU: Contacts of Structural Units for 5ZE1 Structure Factors (2728 Kb) Retrieve 5ZE1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5ZE1 from S2C, [Save to disk]

View 5ZE1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5ZE1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ze1_A] [5ze1_I] [5ze1_M] [5ze1_N] [5ze1_G] [5ze1_F] [5ze1_C] [5ze1_J] [5ze1_D] [5ze1_L] [5ze1_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5ZE1 at PDBWiki (http://pdbwiki.org)

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