5ZFW Transcription Dna date Mar 07, 2018
title Crystal Structure Of Human Dux4 Homeodomains Bound To A11g D
authors Y.Y.Li, B.X.Wu, J.H.Gan
compound source
Molecule: Double Homeobox Protein 4-Like Protein 4
Chain: A
Fragment: Double Homeodomains
Synonym: Dux4
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dux4l4
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'- D(Cpcpapcptpapapcpcptpgpaptpcpapcpapcpc)
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Gpgptpgptpgpaptpcpapgpgptptpapgptpgpg)
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 32 2 1
R_factor 0.192 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.748 64.748 153.484 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for multiple gene regulation by human DUX4., Li Y, Wu B, Liu H, Gao Y, Yang C, Chen X, Zhang J, Chen Y, Gu Y, Li J, Ma J, Gan J, Biochem Biophys Res Commun. 2018 Oct 12. pii: S0006-291X(18)32202-2. doi:, 10.1016/j.bbrc.2018.10.056. PMID:30322619
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (5zfw.pdb1.gz) 76 Kb
  • CSU: Contacts of Structural Units for 5ZFW
  • Structure Factors (537 Kb)
  • Retrieve 5ZFW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZFW from S2C, [Save to disk]
  • View 5ZFW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZFW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zfw_E] [5zfw_A] [5zfw_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZFW
  • Community annotation for 5ZFW at PDBWiki (http://pdbwiki.org)

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