5ZI6 Ligase date Mar 14, 2018
title The Ring Domain Structure Of Mex-3c
authors S.A.Moududee, Y.Tang
compound source
Molecule: Rna-Binding E3 Ubiquitin-Protein Ligase Mex3c
Chain: A, B, C, D, E, F, G, H
Fragment: Unp Residues 605-659
Synonym: Ring Finger And Kh Domain-Containing Protein 2,Rin Protein 194,Ring-Type E3 Ubiquitin Transferase Mex3c;
Ec: 2.3.2.27
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mex3c
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
symmetry Space Group: P 1
R_factor 0.207 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.135 44.567 67.157 92.43 90.50 91.39
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Transferase E.C.2.3.2.27 BRENDA
Primary referenceStructural and functional characterization of hMEX-3C Ring finger domain as an E3 ubiquitin ligase., Moududee SA, Jiang Y, Gilbert N, Xie G, Xu Z, Wu J, Gong Q, Tang Y, Shi Y, Protein Sci. 2018 Sep;27(9):1661-1669. doi: 10.1002/pro.3473. PMID:30095198
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (5zi6.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (5zi6.pdb2.gz) 19 Kb
  • Biological Unit Coordinates (5zi6.pdb3.gz) 19 Kb
  • Biological Unit Coordinates (5zi6.pdb4.gz) 19 Kb
  • CSU: Contacts of Structural Units for 5ZI6
  • Structure Factors (449 Kb)
  • Retrieve 5ZI6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZI6 from S2C, [Save to disk]
  • View 5ZI6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZI6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zi6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zi6_C] [5zi6_E] [5zi6_H] [5zi6_A] [5zi6_G] [5zi6_F] [5zi6_B] [5zi6_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZI6
  • Community annotation for 5ZI6 at PDBWiki (http://pdbwiki.org)

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