5ZJS Structure of AbdB/Exd complex bound to a 'Blue14' DNA sequence date
authors Baburajendran, N., Zeiske, T., Kaczynska, A., Mann, R., Honig, B., Shapiro, L., Palmer, A.G.
compound source
symmetry
R_factor
R_Free 0.2813
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.90
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceIntrinsic DNA Shape Accounts for Affinity Differences between Hox-Cofactor Binding Sites., Zeiske T, Baburajendran N, Kaczynska A, Brasch J, Palmer AG 3rd, Shapiro L, Honig B, Mann RS, Cell Rep. 2018 Aug 28;24(9):2221-2230. doi: 10.1016/j.celrep.2018.07.100. PMID:30157419
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (5zjs.pdb1.gz) 67 Kb
  • CSU: Contacts of Structural Units for 5ZJS
  • Structure Factors (69 Kb)
  • Retrieve 5ZJS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZJS from S2C, [Save to disk]
  • View 5ZJS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZJS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zjs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zjs_A] [5zjs_C] [5zjs_D] [5zjs_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZJS
  • Community annotation for 5ZJS at PDBWiki (http://pdbwiki.org)

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