5ZJU Virus date Mar 22, 2018
title Crystal Structure Of In Vitro Expressed And Assembled Pcv2 V Particle
authors Y.A.Yuan, X.Mo
compound source
Molecule: Capsid Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, 1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y;
Engineered: Yes
Organism_scientific: Porcine Circovirus 2
Organism_common: Pcv2
Organism_taxid: 85708
Gene: Cap
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 1 21 1
R_factor 0.163 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
194.116 201.877 231.281 90.00 90.72 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
S, a, T, N, K, 7, d, Y, E, 2, j, y, Z, u, 1, k, g, t, e, J, W, v, s, B, H, c, q, b, D, I, G, U, w, F, r, x, V, Q, h, M, C, f, L, i, A, 6, n, O, 3, X, P, m, 9, l, 8, p, 4, R, o, 5


Primary referenceStructural roles of PCV2 capsid protein N-terminus in PCV2 particle assembly and identification of PCV2 type-specific neutralizing epitope., Mo X, Li X, Yin B, Deng J, Tian K, Yuan A, PLoS Pathog. 2019 Mar 1;15(3):e1007562. doi: 10.1371/journal.ppat.1007562. PMID:30822338
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3921 Kb) [Save to disk]
  • Biological Unit Coordinates (5zju.pdb1.gz) 3894 Kb
  • CSU: Contacts of Structural Units for 5ZJU
  • Structure Factors (13479 Kb)
  • Retrieve 5ZJU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZJU from S2C, [Save to disk]
  • View 5ZJU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZJU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zju from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zju_4] [5zju_d] [5zju_7] [5zju_G] [5zju_P] [5zju_J] [5zju_2] [5zju_v] [5zju_R] [5zju_B] [5zju_l] [5zju_i] [5zju_8] [5zju_s] [5zju_h] [5zju_f] [5zju_L] [5zju_n] [5zju_p] [5zju_N] [5zju_W] [5zju_k] [5zju_H] [5zju_Z] [5zju_c] [5zju_3] [5zju_Y] [5zju_g] [5zju_A] [5zju_y] [5zju_1] [5zju_e] [5zju_r] [5zju_D] [5zju_q] [5zju_U] [5zju_a] [5zju_T] [5zju_5] [5zju_M] [5zju_S] [5zju_o] [5zju_m] [5zju_6] [5zju_C] [5zju_9] [5zju_K] [5zju_X] [5zju_Q] [5zju_t] [5zju_w] [5zju_u] [5zju_O] [5zju_j] [5zju_b] [5zju_F] [5zju_E] [5zju_x] [5zju_I] [5zju_V]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZJU
  • Community annotation for 5ZJU at PDBWiki (http://pdbwiki.org)

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