5ZJU Virus date Mar 22, 2018
title Crystal Structure Of In Vitro Expressed And Assembled Pcv2 V Particle
authors Y.A.Yuan, X.Mo
compound source
Molecule: Capsid Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, 1, 2, 3, 4, 5, 6, 7, 8, 9, A, B, C, D, E, F, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y;
Engineered: Yes
Organism_scientific: Porcine Circovirus 2
Organism_common: Pcv2
Organism_taxid: 85708
Gene: Cap
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: P 1 21 1
R_factor 0.163 R_Free 0.224
length a length b length c angle alpha angle beta angle gamma
194.116 201.877 231.281 90.00 90.72 90.00
method X-Ray Diffractionresolution 2.80 Å
S, a, T, N, K, 7, d, Y, E, 2, j, y, Z, u, 1, k, g, t, e, J, W, v, s, B, H, c, q, b, D, I, G, U, w, F, r, x, V, Q, h, M, C, f, L, i, A, 6, n, O, 3, X, P, m, 9, l, 8, p, 4, R, o, 5

Primary referenceStructural roles of PCV2 capsid protein N-terminus in PCV2 particle assembly and identification of PCV2 type-specific neutralizing epitope., Mo X, Li X, Yin B, Deng J, Tian K, Yuan A, PLoS Pathog. 2019 Mar 1;15(3):e1007562. doi: 10.1371/journal.ppat.1007562. PMID:30822338
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (3821 Kb) [Save to disk]
  • Biological Unit Coordinates (5zju.pdb1.gz) 3797 Kb
  • CSU: Contacts of Structural Units for 5ZJU
  • Structure Factors (13479 Kb)
  • Retrieve 5ZJU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZJU from S2C, [Save to disk]
  • View 5ZJU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZJU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zju_4] [5zju_d] [5zju_7] [5zju_G] [5zju_P] [5zju_J] [5zju_2] [5zju_v] [5zju_R] [5zju_B] [5zju_l] [5zju_i] [5zju_8] [5zju_s] [5zju_h] [5zju_f] [5zju_L] [5zju_n] [5zju_p] [5zju_N] [5zju_W] [5zju_k] [5zju_H] [5zju_Z] [5zju_c] [5zju_3] [5zju_Y] [5zju_g] [5zju_A] [5zju_y] [5zju_1] [5zju_e] [5zju_r] [5zju_D] [5zju_q] [5zju_U] [5zju_a] [5zju_T] [5zju_5] [5zju_M] [5zju_S] [5zju_o] [5zju_m] [5zju_6] [5zju_C] [5zju_9] [5zju_K] [5zju_X] [5zju_Q] [5zju_t] [5zju_w] [5zju_u] [5zju_O] [5zju_j] [5zju_b] [5zju_F] [5zju_E] [5zju_x] [5zju_I] [5zju_V]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZJU
  • Community annotation for 5ZJU at PDBWiki (http://pdbwiki.org)

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