5ZKO Transcription Dna date Mar 24, 2018
title Crystal Structure Of The Crtc2-Creb-Cre Complex
authors S.Xiang, L.Zhai, J.Valecia-Swain
compound source
Molecule: Cyclic Amp-Responsive Element-Binding Protein 1
Chain: A, C
Synonym: Camp-Responsive Element-Binding Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Creb1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta

Molecule: Dna (5'- D(Cptptpgpgpcptpgpapcpgptpcpapgpcpcpapap
Chain: B, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Creb-Regulated Transcription Coactivator 2
Chain: G, H
Fragment: Binding Domain
Synonym: Transducer Of Regulated Camp Response Element-Bind Protein 2,Transducer Of Creb Protein 2;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Crtc2, Torc2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta
symmetry Space Group: P 1 21 1
R_factor 0.242 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.300 41.320 122.580 90.00 90.61 90.00
method X-Ray Diffractionresolution 3.05 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


H, G


Primary referenceStructural Insights into the CRTC2-CREB Complex Assembly on CRE., Song Y, Zhai L, Valencia Swain J, Chen Y, Wang P, Chen L, Liu Y, Xiang S, J Mol Biol. 2018 Jun 22;430(13):1926-1939. doi: 10.1016/j.jmb.2018.04.038. Epub, 2018 May 4. PMID:29733854
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (5zko.pdb1.gz) 102 Kb
  • CSU: Contacts of Structural Units for 5ZKO
  • Structure Factors (475 Kb)
  • Retrieve 5ZKO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZKO from S2C, [Save to disk]
  • View 5ZKO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZKO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zko from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zko_C] [5zko_A] [5zko_G] [5zko_D] [5zko_B] [5zko_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZKO
  • Community annotation for 5ZKO at PDBWiki (http://pdbwiki.org)

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