5ZOG Hydrolase Dna date Apr 13, 2018
title Crystal Structure Of R192f Hfen1 In Complex With Dna
authors W.Han, Y.Hua, Y.Zhao
compound source
Molecule: Flap Endonuclease 1
Chain: A
Fragment: Nuclease Core (1-333)
Synonym: Fen-1,Dnase Iv,Flap Structure-Specific Endonucleas Maturation Factor 1,Hfen-1;
Ec: 3.1.-.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fen1, Rad2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b

Molecule: Dna (5'-D(Cpcpcpgptpcpc)-3')
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'- D(Ptpcpcptpcptpgpcpcptpcpapapgpapcpgpgpg
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Tpgpapgpgpcpapgpapgpgpapt)
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 2 2 21
R_factor 0.209 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.330 244.800 70.940 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of 5' flap recognition and protein-protein interactions of human flap endonuclease 1., Xu H, Shi R, Han W, Cheng J, Xu X, Cheng K, Wang L, Tian B, Zheng L, Shen B, Hua Y, Zhao Y, Nucleic Acids Res. 2018 Nov 30;46(21):11315-11325. doi: 10.1093/nar/gky911. PMID:30295841
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5zog.pdb1.gz) 69 Kb
  • CSU: Contacts of Structural Units for 5ZOG
  • Structure Factors (596 Kb)
  • Retrieve 5ZOG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZOG from S2C, [Save to disk]
  • View 5ZOG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZOG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zog from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zog_B] [5zog_C] [5zog_A] [5zog_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZOG
  • Community annotation for 5ZOG at PDBWiki (http://pdbwiki.org)

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