5ZR1 Dna Binding Protein Dna date Apr 21, 2018
title Saccharomyces Cerevisiae Origin Recognition Complex Bound To Origin Dna Containing Acs And B1 Element
authors N.Li, W.H.Lam, Y.Zhai, J.Cheng, E.Cheng, Y.Zhao, N.Gao, B.K.Tye
compound source
Molecule: Origin Recognition Complex Subunit 1
Chain: A
Synonym: Origin Recognition Complex 120 Kda Subunit
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Orc1, Yml065w
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 2
Chain: B
Synonym: Origin Recognition Complex 71 Kda Subunit
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Orc2, Rrr1, Sir5, Ybr060c, Ybr0523
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 3
Chain: C
Synonym: Origin Recognition Complex 62 Kda Subunit
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Orc3, Oaf1, Oif1, Yll004w, L1365
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 4
Chain: D
Synonym: Origin Recognition Complex 56 Kda Subunit
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Orc4, Ypr162c, P9325.5
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 5
Chain: E
Synonym: Origin Recognition Complex 53 Kda Subunit
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Orc5, Ynl261w, N0834
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: Origin Recognition Complex Subunit 6
Chain: F
Synonym: Acs-Associated Protein 1,Origin Recognition Comple Subunit;
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Orc6, Aap1, Yhr118c
Expression_system: Saccharomyces Cerevisiae
Expression_system_taxid: 4932

Molecule: 72bp-Oring Dna, Acs305, T-Rich
Chain: G
Engineered: Yes

Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932

Molecule: 72bp-Oring Dna, Acs305, A-Rich
Chain: H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_taxid: 4932
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.00 Å
ligand AGS, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • chromatin silencing at telom...

  • C


    D


    E


    F


    Primary referenceStructure of the origin recognition complex bound to DNA replication origin., Li N, Lam WH, Zhai Y, Cheng J, Cheng E, Zhao Y, Gao N, Tye BK, Nature. 2018 Jul;559(7713):217-222. doi: 10.1038/s41586-018-0293-x. Epub 2018 Jul, 4. PMID:29973722
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (414 Kb) [Save to disk]
  • Biological Unit Coordinates (5zr1.pdb1.gz) 403 Kb
  • LPC: Ligand-Protein Contacts for 5ZR1
  • CSU: Contacts of Structural Units for 5ZR1
  • Retrieve 5ZR1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZR1 from S2C, [Save to disk]
  • View 5ZR1 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZR1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zr1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zr1_D] [5zr1_E] [5zr1_H] [5zr1_G] [5zr1_F] [5zr1_A] [5zr1_B] [5zr1_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZR1
  • Community annotation for 5ZR1 at PDBWiki (http://pdbwiki.org)

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