5ZRS Hydrolase date Apr 25, 2018
title Crystal Structure Of Pet-Degrading Cutinase Cut190 S176as22 Mutant In Monoethyl Adipate Bound State
authors N.Numoto, N.Kamiya, G.J.Bekker, Y.Yamagami, S.Inaba, K.Ishii, S.Uc F.Kawai, N.Ito, M.Oda
compound source
Molecule: Alphabeta Hydrolase Family Protein
Chain: A
Synonym: Cutinase
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomonospora Viridis
Organism_taxid: 1852
Gene: Cut190, Samn02982918_2340
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta-Gami B (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe80l
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.457 63.856 78.785 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand 9J6, CA, GOL, MHO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Dynamics of the PET-Degrading Cutinase-like Enzyme from Saccharomonospora viridis AHK190 in Substrate-Bound States Elucidates the Ca(2+)-Driven Catalytic Cycle., Numoto N, Kamiya N, Bekker GJ, Yamagami Y, Inaba S, Ishii K, Uchiyama S, Kawai F, Ito N, Oda M, Biochemistry. 2018 Sep 11;57(36):5289-5300. doi: 10.1021/acs.biochem.8b00624., Epub 2018 Aug 27. PMID:30110540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5zrs.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5ZRS
  • CSU: Contacts of Structural Units for 5ZRS
  • Structure Factors (1806 Kb)
  • Retrieve 5ZRS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZRS from S2C, [Save to disk]
    • View 5ZRS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5ZRS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zrs_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5ZRS
  • Community annotation for 5ZRS at PDBWiki (http://pdbwiki.org)

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