5ZRV Liase, Oxidoreductase Transferase date Apr 25, 2018
title Structure Of Human Mitochondrial Trifunctional Protein, Octa
authors K.Liang, N.Li, J.Dai, X.Wang, P.Liu, X.Chen, C.Wang, N.Gao, J.Xiao
compound source
Molecule: Trifunctional Enzyme Subunit Alpha, Mitochondrial
Chain: A, C, E, G
Synonym: Tp-Alpha, Mitochondrial Trifunctional Protein-Alph
Ec: 4.2.1.17,1.1.1.211
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hadha, Hadh
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Trifunctional Enzyme Subunit Beta, Mitochondrial
Chain: B, D, F, H
Synonym: Tp-Beta
Ec: 2.3.1.16
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hadhb, Mstp029
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.70 Å
ligand
enzyme Lyase E.C.4.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D


Primary referenceCryo-EM structure of human mitochondrial trifunctional protein., Liang K, Li N, Wang X, Dai J, Liu P, Wang C, Chen XW, Gao N, Xiao J, Proc Natl Acad Sci U S A. 2018 Jun 18. pii: 1801252115. doi:, 10.1073/pnas.1801252115. PMID:29915090
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (375 Kb) [Save to disk]
  • Biological Unit Coordinates (5zrv.pdb1.gz) 344 Kb
  • CSU: Contacts of Structural Units for 5ZRV
  • Retrieve 5ZRV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZRV from S2C, [Save to disk]
  • View 5ZRV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZRV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zrv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zrv_D] [5zrv_A] [5zrv_G] [5zrv_F] [5zrv_C] [5zrv_B] [5zrv_E] [5zrv_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZRV
  • Community annotation for 5ZRV at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science