5ZUJ Protein Binding date May 07, 2018
title Binding And Enhanced Binding Between Key Immunity Proteins T Tifa
authors W.C.Huang, M.Maestre-Reyna, T.C.Hsiao, M.D.Tsai
compound source
Molecule: Tnf Receptor-Associated Factor 6
Chain: A
Synonym: E3 Ubiquitin-Protein Ligase Traf6,Interleukin-1 Si Transducer,Ring Finger Protein 85,Ring-Type E3 Ubiquitin Tr Traf6;
Ec: 2.3.2.27
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Traf6, Rnf85
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Peptide 170-184 From Traf-Interacting Protein Wit Domain-Containing Protein A;
Chain: I
Synonym: Traf2-Binding Protein
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 61 2 2
R_factor 0.193 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.518 51.518 335.679 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand
enzyme Transferase E.C.2.3.2.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBinding and Enhanced Binding between Key Immunity Proteins TRAF6 and TIFA., Huang WC, Liao JH, Hsiao TC, Wei TW, Maestre-Reyna M, Bessho Y, Tsai MD, Chembiochem. 2018 Oct 31. doi: 10.1002/cbic.201800436. PMID:30378729
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (5zuj.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 5ZUJ
  • Structure Factors (420 Kb)
  • Retrieve 5ZUJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZUJ from S2C, [Save to disk]
  • View 5ZUJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZUJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zuj_I] [5zuj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZUJ
  • Community annotation for 5ZUJ at PDBWiki (http://pdbwiki.org)

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