5ZVX Isomerase date May 13, 2018
title Crystal Structure Of K86a Mutant Of Phosphomannose Isomerase Salmonella Typhimurium
authors M.Bangera, M.R.N.Murthy
compound source
Molecule: Mannose-6-Phosphate Isomerase
Chain: A
Synonym: Phosphohexomutase,Phosphomannose Isomerase,Pmi
Ec: 5.3.1.8
Engineered: Yes
Mutation: Yes
Organism_scientific: Salmonella Typhimurium (Strain Lt2 S Atcc 700720);
Organism_taxid: 99287
Strain: Lt2 Sgsc1412 Atcc 700720
Gene: Mana, Pmi, Stm1467
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.190 91.730 116.660 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand EDO, ZN enzyme Isomerase E.C.5.3.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional insights into phosphomannose isomerase: the role of zinc and catalytic residues., Bangera M, Gowda K G, Sagurthi SR, Murthy MRN, Acta Crystallogr D Struct Biol. 2019 May 1;75(Pt 5):475-487. doi:, 10.1107/S2059798319004169. Epub 2019 Apr 29. PMID:31063150
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (5zvx.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 5ZVX
  • CSU: Contacts of Structural Units for 5ZVX
  • Structure Factors (1187 Kb)
  • Retrieve 5ZVX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZVX from S2C, [Save to disk]
  • View 5ZVX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZVX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zvx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZVX
  • Community annotation for 5ZVX at PDBWiki (http://pdbwiki.org)

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