5ZYQ Transcription date May 28, 2018
title The Structure Of Human Paf1ctr9 Complex
authors Y.Xie, M.Zheng, H.Zhou, J.Long
compound source
Molecule: Rna Polymerase-Associated Protein Ctr9 Homolog,Rn Polymerase II-Associated Factor 1 Homolog;
Chain: A
Synonym: Sh2 Domain-Binding Protein 1,Hpaf1,Pancreatic Differentiation Protein 2;
Engineered: Yes
Other_details: Fusion Protein Of Residues 1-249 From Protei Q6pd62) And Residues 57-116 From Paf1 (Rna Polymerase II-As Factor 1 Homolog, Unp Q8n7h5)
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ctr9, Kiaa0155, Sh2bp1, Paf1, Pd2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 31 1 2
R_factor 0.202 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.415 82.415 145.660 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.53 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePaf1 and Ctr9 subcomplex formation is essential for Paf1 complex assembly and functional regulation., Xie Y, Zheng M, Chu X, Chen Y, Xu H, Wang J, Zhou H, Long J, Nat Commun. 2018 Sep 18;9(1):3795. doi: 10.1038/s41467-018-06237-7. PMID:30228257
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (5zyq.pdb1.gz) 101 Kb
  • CSU: Contacts of Structural Units for 5ZYQ
  • Structure Factors (267 Kb)
  • Retrieve 5ZYQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZYQ from S2C, [Save to disk]
  • View 5ZYQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZYQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zyq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zyq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZYQ
  • Community annotation for 5ZYQ at PDBWiki (http://pdbwiki.org)

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