5ZYW Dna Binding Protein date May 28, 2018
title The Crystal Structure Of Apo-Hsmgme1 With Mn2+
authors C.Yang, J.Gan
compound source
Molecule: Mitochondrial Genome Maintenance Exonuclease 1
Chain: A
Ec: 3.1.-.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mgme1, C20orf72, Ddk1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 43 21 2
R_factor 0.226 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.997 67.997 114.841 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand GOL, MN, TLA enzyme Hydrolase E.C.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (5zyw.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 5ZYW
  • CSU: Contacts of Structural Units for 5ZYW
  • Structure Factors (391 Kb)
  • Retrieve 5ZYW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZYW from S2C, [Save to disk]
  • View 5ZYW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZYW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zyw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZYW
  • Community annotation for 5ZYW at PDBWiki (http://pdbwiki.org)

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