5ZZ9 Protein Binding date May 31, 2018
title Crystal Structure Of Homer2 Evh1drebrin Ppxxf Complex
authors Z.Li, H.Liu, J.Li, W.Liu, M.Zhang
compound source
Molecule: Homer Protein Homolog 2
Chain: A, B, C
Synonym: Homer-2,Cupidin,Vaspena-Related Gene Up-Regulated Seizure And Ltp 2,Vesl-2;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Homer2, Vesl2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Peptide From Drebrin
Chain: D, E, F
Synonym: Developmentally-Regulated Brain Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dbn1, D0s117e
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.192 R_Free 0.228
length a length b length c angle alpha angle beta angle gamma
45.337 47.808 50.415 70.44 83.56 90.39
method X-Ray Diffractionresolution 2.30 Å
Primary referenceHomer Tetramer Promotes Actin Bundling Activity of Drebrin., Li Z, Liu H, Li J, Yang Q, Feng Z, Li Y, Yang H, Yu C, Wan J, Liu W, Zhang M, Structure. 2018 Nov 5. pii: S0969-2126(18)30372-1. doi:, 10.1016/j.str.2018.10.011. PMID:30503778
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (5zz9.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (5zz9.pdb2.gz) 42 Kb
  • Biological Unit Coordinates (5zz9.pdb3.gz) 42 Kb
  • CSU: Contacts of Structural Units for 5ZZ9
  • Structure Factors (360 Kb)
  • Retrieve 5ZZ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZZ9 from S2C, [Save to disk]
  • View 5ZZ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZZ9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zz9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zz9_D] [5zz9_C] [5zz9_F] [5zz9_A] [5zz9_B] [5zz9_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZZ9
  • Community annotation for 5ZZ9 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science