5A3D Structural insights into the recognition of cisplatin and AAF-dG lesions by Rad14 (XPA) date
authors Kuper, J., Koch, S.C., Gasteiger, K.L., Wichlein, N., Schneider, S., Kisker, C., Carell, T.
compound source
symmetry
R_factor
R_Free 0.24076
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand 5IU, 8FG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural insights into the recognition of cisplatin and AAF-dG lesion by Rad14 (XPA)., Koch SC, Kuper J, Gasteiger KL, Simon N, Strasser R, Eisen D, Geiger S, Schneider S, Kisker C, Carell T, Proc Natl Acad Sci U S A. 2015 Jun 22. pii: 201508509. PMID:26100901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (5a3d.pdb1.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 5A3D
  • CSU: Contacts of Structural Units for 5A3D
  • Structure Factors (464 Kb)
  • Retrieve 5A3D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5A3D from S2C, [Save to disk]
  • Re-refined 5a3d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5A3D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5A3D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5a3d_A] [5a3d] [5a3d_B] [5a3d_D] [5a3d_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5A3D
  • Community annotation for 5A3D at PDBWiki (http://pdbwiki.org)

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