5CEY	Immune System	date	Jul 07, 2015
title	Crystal Structure Of Fab 9h+3l, A Putative Precursor Of The Family Of Potent Hiv-1 Antibodies
authors	I.A.Wilson, F.Garces
compound		source
Molecule: Antibody 9h+3l Fab Light Chain Chain: A, C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606
Molecule: Antibody 9h+3l Fab Heavy Chain Chain: B, D Engineered: Yes		Organism_scientific: Homo Sapiens Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.224 R_Free 0.273
crystal cell	length a length b length c angle alpha angle beta angle gamma 40.736 338.146 62.115 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.39 Å
ligand	GOL, P6G, PE7	enzyme
Primary reference	Affinity Maturation of a Potent Family of HIV Antibodies Is Primarily Focused on Accommodating or Avoiding Glycans., Garces F, Lee JH, de Val N, Torrents de la Pena A, Kong L, Puchades C, Hua Y, Stanfield RL, Burton DR, Moore JP, Sanders RW, Ward AB, Wilson IA, Immunity. 2015 Dec 15;43(6):1053-63. doi: 10.1016/j.immuni.2015.11.007. PMID:26682982

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk] Biological Unit Coordinates (5cey.pdb1.gz) 71 Kb Biological Unit Coordinates (5cey.pdb2.gz) 69 Kb LPC: Ligand-Protein Contacts for 5CEY CSU: Contacts of Structural Units for 5CEY Structure Factors (966 Kb) Retrieve 5CEY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5CEY from S2C, [Save to disk] Re-refined 5cey structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5CEY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5CEY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5cey_D] [5cey_A] [5cey_B] [5cey] [5cey_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5CEY: [IG_like] [IGv ] by SMART

Other resources with information on 5CEY

Community annotation for 5CEY at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---