5EMW Transcription date Nov 06, 2015
title Crystal Structure Of The Palmitoylated Human Tead3 Transcrip Factor
authors C.L.Noland, S.Gierke, P.D.Schnier, J.Murray, W.N.Sandoval, M.Sago A.Dey, R.N.Hannoush, W.J.Fairbrother, C.N.Cunningham
compound source
Molecule: Transcriptional Enhancer Factor Tef-5
Chain: A, B, C, D
Fragment: Yap Binding Domain
Synonym: Dtef-1,Tea Domain Family Member 3,Tead-3
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tead3, Tead5, Tef5
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.310 123.530 150.730 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand CA, P1L enzyme
Primary referencePalmitoylation of TEAD Transcription Factors Is Required for Their Stability and Function in Hippo Pathway Signaling., Noland CL, Gierke S, Schnier PD, Murray J, Sandoval WN, Sagolla M, Dey A, Hannoush RN, Fairbrother WJ, Cunningham CN, Structure. 2016 Jan 5;24(1):179-86. doi: 10.1016/j.str.2015.11.005. Epub 2015 Dec, 24. PMID:26724994
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (282 Kb) [Save to disk]
  • Biological Unit Coordinates (5emw.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (5emw.pdb2.gz) 71 Kb
  • Biological Unit Coordinates (5emw.pdb3.gz) 71 Kb
  • Biological Unit Coordinates (5emw.pdb4.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 5EMW
  • CSU: Contacts of Structural Units for 5EMW
  • Structure Factors (794 Kb)
  • Retrieve 5EMW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5EMW from S2C, [Save to disk]
  • Re-refined 5emw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5EMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5EMW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5emw] [5emw_A] [5emw_C] [5emw_D] [5emw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5EMW
  • Community annotation for 5EMW at PDBWiki (http://pdbwiki.org)

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