5HVM Transferase date Jan 28, 2016
title Structure Of Aspergillus Fumigatus Trehalose-6-Phosphate Syn Complex With Udp And Validoxylamine A
authors Y.Miao, R.G.Brennan
compound source
Molecule: Alpha,Alpha-Trehalose-Phosphate Synthase (Udp-For
Chain: A, B
Synonym: Trehalose-6-Phosphate Synthase
Engineered: Yes
Organism_scientific: Neosartorya Fumigata (Strain Atcc Mya- Af293 Cbs 101355 Fgsc A1100);
Organism_taxid: 330879
Strain: Atcc Mya-4609 Af293 Cbs 101355 Fgsc A1100
Gene: Afua_6g12950
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 2 21
R_factor 0.176 R_Free 0.231
length a length b length c angle alpha angle beta angle gamma
83.915 101.153 146.992 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.82 Å
ligand UDP, VDM enzyme Transferase E.C. BRENDA
A, B

Primary referenceStructural and In Vivo Studies on Trehalose-6-Phosphate Synthase from Pathogenic Fungi Provide Insights into Its Catalytic Mechanism, Biological Necessity, and Potential for Novel Antifungal Drug Design., Miao Y, Tenor JL, Toffaletti DL, Maskarinec SA, Liu J, Lee RE, Perfect JR, Brennan RG, MBio. 2017 Jul 25;8(4). pii: e00643-17. doi: 10.1128/mBio.00643-17. PMID:28743811
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk]
  • Biological Unit Coordinates (5hvm.pdb1.gz) 149 Kb
  • Biological Unit Coordinates (5hvm.pdb2.gz) 295 Kb
  • LPC: Ligand-Protein Contacts for 5HVM
  • CSU: Contacts of Structural Units for 5HVM
  • Structure Factors (269 Kb)
  • Retrieve 5HVM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HVM from S2C, [Save to disk]
  • Re-refined 5hvm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HVM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HVM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hvm_B] [5hvm_A] [5hvm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HVM
  • Community annotation for 5HVM at PDBWiki (http://pdbwiki.org)

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