5IEF	Hydrolase	date	Feb 25, 2016
title	Murine Endoplasmic Reticulum Alpha-Glucosidase II With N-But Deoxynojirimycin
authors	A.T.Caputo, P.Roversi, D.S.Alonzi, J.L.Kiappes, N.Zitzmann
compound		source
Molecule: Neutral Alpha-Glucosidase Ab Chain: A Synonym: Alpha-Glucosidase 2,Glucosidase II Subunit Alpha Ec: 3.2.1.84 Engineered: Yes Other_details: This Chain Contains All Of The Residues From Mature Q8bhn3 Isoform 2 (I.E. No Signal Peptide And Starts 33) But Has Been Trypsinised So That There Are Two Gaps In Sequence Between: 186-243 And 351-369 (Inclusive)		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Ganab, G2an, Kiaa0088 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek 293-F Expression_system_organ: Kidney Expression_system_cell: Endothelial Expression_system_vector_type: Plasmid Expression_system_plasmid: Popings
Molecule: Glucosidase 2 Subunit Beta Chain: B Synonym: 80k-H Protein,Glucosidase II Subunit Beta,Protein Substrate 60.1 Kda Protein Heavy Chain,Pkcsh; Engineered: Yes Other_details: This Chain Contains All Of The Residues From Mature O08795 But Has Been Trypsinised So That There All Th Crystallised Are Residues: 30-117		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Prkcsh Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek 293-F Expression_system_organ: Kidney Expression_system_cell: Endothelial Expression_system_vector_type: Plasmid Expression_system_plasmid: Poping
symmetry	Space Group: P 21 21 2	R_factor 0.186 R_Free 0.218
crystal cell	length a length b length c angle alpha angle beta angle gamma 103.840 172.890 62.770 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.38 Å
ligand	ACT, CA, FMT, NAG, NBV, P6G	enzyme	Hydrolase E.C.3.2.1.84 BRENDA
Gene Ontology	Chain Function Process Component A B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk] Biological Unit Coordinates (5ief.pdb1.gz) 162 Kb LPC: Ligand-Protein Contacts for 5IEF CSU: Contacts of Structural Units for 5IEF Structure Factors (2857 Kb) Retrieve 5IEF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IEF from S2C, [Save to disk] Re-refined 5ief structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IEF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5IEF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ief] [5ief_B] [5ief_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5IEF: [LDLa ] by SMART

Other resources with information on 5IEF

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