5JEU Dna date Apr 19, 2016
title Del-[Ru(Phen)2(Dppz)]2+ Bound To D(Tcggcgccga) With Ba2+
authors J.P.Hall, C.J.Cardin
compound source
Molecule: Dna (5'-D(Tpcpgpgpcpgpcpcpgpa)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 41 21 2
R_factor 0.113 R_Free 0.127
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.620 48.620 29.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.97 Å
ligand 0TN, BA, CL enzyme
Primary referenceDelta chirality ruthenium 'light-switch' complexes can bind in the minor groove of DNA with five different binding modes., Hall JP, Keane PM, Beer H, Buchner K, Winter G, Sorensen TL, Cardin DJ, Brazier JA, Cardin CJ, Nucleic Acids Res. 2016 Sep 5. pii: gkw753. PMID:27599841
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (5jeu.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 5JEU
  • CSU: Contacts of Structural Units for 5JEU
  • Structure Factors (1300 Kb)
  • Retrieve 5JEU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JEU from S2C, [Save to disk]
  • Re-refined 5jeu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JEU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JEU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jeu] [5jeu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JEU
  • Community annotation for 5JEU at PDBWiki (http://pdbwiki.org)

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