5JEV Dna date Apr 19, 2016
title Del-[Ru(Phen)2(Dppz]2+ Bound To D(Tcggcgccga) With Cobalt He
authors J.P.Hall, C.J.Cardin
compound source
Molecule: Dna (5'-D(Tpcpgpgpcpgpcpcpgpa)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 41 21 2
R_factor 0.123 R_Free 0.141
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.720 48.720 29.960 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.99 Å
ligand 0TN, NCO enzyme
Primary referenceDelta chirality ruthenium 'light-switch' complexes can bind in the minor groove of DNA with five different binding modes., Hall JP, Keane PM, Beer H, Buchner K, Winter G, Sorensen TL, Cardin DJ, Brazier JA, Cardin CJ, Nucleic Acids Res. 2016 Sep 5. pii: gkw753. PMID:27599841
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (5jev.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5JEV
  • CSU: Contacts of Structural Units for 5JEV
  • Structure Factors (1228 Kb)
  • Retrieve 5JEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JEV from S2C, [Save to disk]
  • Re-refined 5jev structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JEV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jev] [5jev_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JEV
  • Community annotation for 5JEV at PDBWiki (http://pdbwiki.org)

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