5RU1 Viral Protein, Hydrolase date Sep 28, 2020
title Pandda Analysis Group Deposition -- Crystal Structure Of Sar Nsp3 Macrodomain In Complex With Zinc000000034687
authors G.J.Correy, I.D.Young, M.C.Thompson, J.S.Fraser
compound source
Molecule: Non-Structural Protein 3
Chain: A, B
Synonym: Nsp3,Pl2-Pro,Papain-Like Protease,Papain-Like Prot Pro;
Ec: 3.4.19.121, 3.4.22.-
Engineered: Yes
Other_details: His6 Purification Tag And Linker (Mhhhhhhssgvdlgtenlyfq) Cleaved With Tev Protease
 Organism_scientific: Severe Acute Respiratory Syndrome Coro 2;
Organism_common: 2019-Ncov
Organism_taxid: 2697049
Gene: Rep, 1a-1b
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b(+)
symmetry Space Group: P 43
R_factor 0.165 R_Free 0.180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.786 88.786 39.448 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.00 Å
ligand DFA enzyme Hydrolase E.C.3.4.19.121 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (5ru1.pdb1.gz) 82 Kb
  • Biological Unit Coordinates (5ru1.pdb2.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 5RU1
  • CSU: Contacts of Structural Units for 5RU1
  • Structure Factors (16760 Kb)
  • Retrieve 5RU1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5RU1 from S2C, [Save to disk]
    • View 5RU1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5RU1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ru1_B] [5ru1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5RU1
  • Community annotation for 5RU1 at PDBWiki (http://pdbwiki.org)

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