6A08 Flavoprotein date Jun 05, 2018
title The Crystal Structure Of Mandelate Oxidase With Benzoyl-Form
authors T.L.Li, K.H.Lin
compound source
Molecule: 4-Hydroxymandelate Oxidase
Chain: A
Ec: 1.1.3.46
Engineered: Yes
Organism_scientific: Amycolatopsis Orientalis
Organism_common: Nocardia Orientalis
Organism_taxid: 31958
Gene: Hmo
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4 2 2
R_factor 0.164 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
137.911 137.911 111.773 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand 173, FMN, MG enzyme Oxidoreductase E.C.1.1.3.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (6a08.pdb1.gz) 247 Kb
  • LPC: Ligand-Protein Contacts for 6A08
  • CSU: Contacts of Structural Units for 6A08
  • Structure Factors (3508 Kb)
  • Retrieve 6A08 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A08 from S2C, [Save to disk]
  • View 6A08 in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6A08
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6a08 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a08_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6A08
  • Community annotation for 6A08 at PDBWiki (http://pdbwiki.org)

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