6A0H Hydrolase date Jun 05, 2018
title Crystal Structure Of Human Protein N-Terminal Asparagine Amidohydrolase (Ntan1) C75s Mutant With Asn-Leu-Ala-Ala-Arg
authors J.S.Park, B.W.Han
compound source
Molecule: Protein N-Terminal Asparagine Amidohydrolase
Chain: A, B
Synonym: Protein Nh2-Terminal Asparagine Amidohydrolase,Pna Nh2-Terminal Asparagine Deamidase,Protein Ntn-Amidase;
Ec: 3.5.1.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ntan1
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21

Molecule: 5-Mer Peptide Asn-Leu-Ala-Ala-Arg
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.003 85.884 88.094 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.19 Å
ligand GOL, PO4 enzyme Hydrolase E.C.3.5.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Analyses on the Deamidation of N-Terminal Asn in the Human N-Degron Pathway., Park JS, Lee JY, Nguyen YTK, Kang NW, Oh EK, Jang DM, Kim HJ, Kim DD, Han BW, Biomolecules. 2020 Jan 20;10(1). pii: biom10010163. doi: 10.3390/biom10010163. PMID:31968674
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (6a0h.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (6a0h.pdb2.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 6A0H
  • CSU: Contacts of Structural Units for 6A0H
  • Structure Factors (290 Kb)
  • Retrieve 6A0H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A0H from S2C, [Save to disk]
  • View 6A0H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6A0H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a0h_A] [6a0h_D] [6a0h_C] [6a0h_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6A0H
  • Community annotation for 6A0H at PDBWiki (http://pdbwiki.org)

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