6A66 Sugar Binding Protein date Jun 26, 2018
title Placental Protein 13galectin-13 Variant R53h With Tris
authors J.Y.Su
compound source
Molecule: Galactoside-Binding Soluble Lectin 13
Chain: A
Fragment: Unp Residues 2-139
Synonym: Galectin-13,Gal-13
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lgals13
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 2
R_factor 0.184 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.231 92.060 50.682 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceResetting the ligand binding site of placental protein 13/galectin-13 recovers its ability to bind lactose., Su J, Cui L, Si Y, Song C, Li Y, Yang T, Wang H, Mayo KH, Tai G, Zhou Y, Biosci Rep. 2018 Dec 14;38(6). pii: BSR20181787. doi: 10.1042/BSR20181787. Print , 2018 Dec 21. PMID:30413611
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (6a66.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 6A66
  • CSU: Contacts of Structural Units for 6A66
  • Structure Factors (681 Kb)
  • Retrieve 6A66 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A66 from S2C, [Save to disk]
  • View 6A66 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6A66
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a66_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6A66
  • Community annotation for 6A66 at PDBWiki (http://pdbwiki.org)

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