6A6L Rna Binding Protein Rna date Jun 28, 2018
title Crystal Structure Of The Cold Shock Domain Of Yb-1 In Comple Rna
authors Y.Huang
compound source
Molecule: Nuclease-Sensitive Element-Binding Protein 1
Chain: A
Synonym: Yb-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Yb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (5'-R(Pcpapup(5mc))-3')
Chain: D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Synthetic Construct
Expression_system_taxid: 32630
symmetry Space Group: P 62
R_factor 0.180 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.380 66.380 34.702 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.78 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (20 Kb) [Save to disk]
  • Biological Unit Coordinates (6a6l.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 6A6L
  • Structure Factors (60 Kb)
  • Retrieve 6A6L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A6L from S2C, [Save to disk]
  • View 6A6L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6A6L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6a6l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a6l_A] [6a6l_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6A6L
  • Community annotation for 6A6L at PDBWiki (http://pdbwiki.org)

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