6A70 Membrane Protein date Jun 29, 2018
title Structure Of The Human Pkd1pkd2 Complex
authors Q.Su, F.Hu, X.Ge, J.Lei, S.Yu, T.Wang, Q.Zhou, C.Mei, Y.Shi
compound source
Molecule: Polycystin-2
Chain: A, F, G
Synonym: Pc2,Autosomal Dominant Polycystic Kidney Disease T Protein,Polycystic Kidney Disease 2 Protein,Polycystwin,R48 Transient Receptor Potential Cation Channel Subfamily P Mem
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkd2, Trpp2
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f
Expression_system_vector: Mammalian Expression Vector Pck9

Molecule: Polycystin-1
Chain: B
Synonym: Pc1,Autosomal Dominant Polycystic Kidney Disease 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pkd1
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293f
Expression_system_vector: Mammalian Expression Vector Pck9
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.60 Å
Gene
Ontology
ChainFunctionProcessComponent
B


F, A, G


Primary referenceStructure of the human PKD1/PKD2 complex., Su Q, Hu F, Ge X, Lei J, Yu S, Wang T, Zhou Q, Mei C, Shi Y, Science. 2018 Aug 9. pii: science.aat9819. doi: 10.1126/science.aat9819. PMID:30093605
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (281 Kb) [Save to disk]
  • Biological Unit Coordinates (6a70.pdb1.gz) 270 Kb
  • CSU: Contacts of Structural Units for 6A70
  • Retrieve 6A70 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A70 from S2C, [Save to disk]
  • View 6A70 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6A70
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a70_F] [6a70_B] [6a70_A] [6a70_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6A70
  • Community annotation for 6A70 at PDBWiki (http://pdbwiki.org)

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