6A8R Dna Binding Protein Dna date Jul 10, 2018
title Crystal Structure Of Dux4 Hd2 Domain Associated With Erg Dna Site
authors X.Dong, H.Zhang, N.Cheng, G.Meng
compound source
Molecule: Double Homeobox Protein 4
Chain: B, A
Synonym: Double Homeobox Protein 10
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dux4, Dux10
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Ptpgpaptpgpapgpaptpt)-3')
Chain: E
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606

Molecule: Dna (5'-D(Papaptpcptpcpaptpcpa)-3')
Chain: F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 31
R_factor 0.201 R_Free 0.207
crystal
cell
length a length b length c angle alpha angle beta angle gamma
32.550 32.550 126.591 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDUX4HD2-DNAERG structure reveals new insight into DUX4-Responsive-Element., Dong X, Zhang H, Cheng N, Li K, Meng G, Leukemia. 2018 Oct 12. pii: 10.1038/s41375-018-0273-z. doi:, 10.1038/s41375-018-0273-z. PMID:30315230
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (6a8r.pdb1.gz) 31 Kb
  • Biological Unit Coordinates (6a8r.pdb2.gz) 49 Kb
  • CSU: Contacts of Structural Units for 6A8R
  • Structure Factors (795 Kb)
  • Retrieve 6A8R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A8R from S2C, [Save to disk]
  • View 6A8R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6A8R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6a8r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a8r_F] [6a8r_B] [6a8r_A] [6a8r_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6A8R
  • Community annotation for 6A8R at PDBWiki (http://pdbwiki.org)

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