6A9B Transferase date Jul 12, 2018
title T4 Dcmp Hydroxymethylase Structure Solved By I-Sad Using A H
authors S.H.Park, H.K.Song
compound source
Molecule: Deoxycytidylate 5-Hydroxymethyltransferase
Chain: A
Synonym: Deoxycytidylate Hydroxymethylase,Dcmp Hydroxymethy Hmase;
Ec: 2.1.2.8
Engineered: Yes
 Organism_scientific: Enterobacteria Phage T4
Organism_common: Bacteriophage T4
Organism_taxid: 10665
Gene: 42
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: I 2 2 2
R_factor 0.160 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.603 74.982 155.345 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.01 Å
ligand IOD, PO4 enzyme Transferase E.C.2.1.2.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (6a9b.pdb1.gz) 90 Kb
  • LPC: Ligand-Protein Contacts for 6A9B
  • CSU: Contacts of Structural Units for 6A9B
  • Structure Factors (412 Kb)
  • Retrieve 6A9B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A9B from S2C, [Save to disk]
    • View 6A9B in 3D
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    • Visual 3D analysis of 6A9B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a9b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6A9B
  • Community annotation for 6A9B at PDBWiki (http://pdbwiki.org)

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