6A9P Structural Protein date Jul 14, 2018
title Crystal Structure Of The Human Glial Fibrillary Acidic Prote Domain
authors M.S.Jin, B.Kim, S.Kim
compound source
Molecule: Glial Fibrillary Acidic Protein
Chain: A, B, C, D, E, F, G, H
Synonym: Gfap
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gfap
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.269 R_Free 0.311
crystal
cell
length a length b length c angle alpha angle beta angle gamma
23.588 106.158 113.225 77.56 90.14 83.80
method X-Ray Diffractionresolution 2.51 Å
Primary referenceCrystal structure of the human glial fibrillary acidic protein 1B domain., Kim B, Kim S, Jin MS, Biochem Biophys Res Commun. 2018 Sep 18;503(4):2899-2905. doi:, 10.1016/j.bbrc.2018.08.066. Epub 2018 Aug 17. PMID:30126635
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (297 Kb) [Save to disk]
  • Biological Unit Coordinates (6a9p.pdb1.gz) 147 Kb
  • Biological Unit Coordinates (6a9p.pdb2.gz) 147 Kb
  • CSU: Contacts of Structural Units for 6A9P
  • Structure Factors (982 Kb)
  • Retrieve 6A9P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A9P from S2C, [Save to disk]
  • View 6A9P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6A9P
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6a9p from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a9p_B] [6a9p_F] [6a9p_C] [6a9p_H] [6a9p_D] [6a9p_E] [6a9p_G] [6a9p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6A9P
  • Community annotation for 6A9P at PDBWiki (http://pdbwiki.org)

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