6A9X Protein Binding date Jul 16, 2018
title Crystal Structure Of Ankggabarap Complex
authors C.Wang, J.Li, K.Chen, M.Zhang
compound source
Molecule: Gamma-Aminobutyric Acid Receptor-Associated Prote
Chain: D
Synonym: Gabarap, Gaba(A) Receptor-Associated Protein
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Gabarap
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ankyrin-3
Chain: A
Synonym: Ankg, Ank-3,Ankyrin-G
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Ank3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 3
R_factor 0.203 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.991 96.991 96.991 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
D


Primary referenceAnkyrin-G regulates forebrain connectivity and network synchronization via interaction with GABARAP., Nelson AD, Caballero-Floran RN, Rodriguez Diaz JC, Hull JM, Yuan Y, Li J, Chen K, Walder KK, Lopez-Santiago LF, Bennett V, McInnis MG, Isom LL, Wang C, Zhang M, Jones KS, Jenkins PM, Mol Psychiatry. 2018 Nov 30. pii: 10.1038/s41380-018-0308-x. doi:, 10.1038/s41380-018-0308-x. PMID:30504823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (6a9x.pdb1.gz) 46 Kb
  • CSU: Contacts of Structural Units for 6A9X
  • Structure Factors (172 Kb)
  • Retrieve 6A9X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6A9X from S2C, [Save to disk]
  • View 6A9X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6A9X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6a9x_D] [6a9x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6A9X
  • Community annotation for 6A9X at PDBWiki (http://pdbwiki.org)

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