6AA8 Oxidoreductase date Jul 17, 2018
title Crystal Structure Of (S)-3-Hydroxybutyryl-Coenzymea Dehydrog Clostridium Acetobutylicum Complexed With Nad+
authors M.Takenoya, S.Taguchi, S.Yajima
compound source
Molecule: 3-Hydroxybutyryl-Coa Dehydrogenase
Chain: A, B, C, D, E, F
Synonym: (S)-3-Hydroxybutyl-Coa Dehydrogenase,Beta-Hydroxyb Dehydrogenase,Bhbd;
Ec: 1.1.1.157
Engineered: Yes
 Organism_scientific: Clostridium Acetobutylicum (Strain Atc Dsm 792 Jcm 1419 Lmg 5710 Vkm B-1787);
Organism_taxid: 272562
Strain: Atcc 824 Dsm 792 Jcm 1419 Lmg 5710 Vkm B-17
Gene: Hbd, Ca_c2708
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.192 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.375 157.939 81.797 90.00 100.91 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand NAD enzyme Oxidoreductase E.C.1.1.1.157 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (6aa8.pdb1.gz) 259 Kb
  • LPC: Ligand-Protein Contacts for 6AA8
  • CSU: Contacts of Structural Units for 6AA8
  • Structure Factors (2695 Kb)
  • Retrieve 6AA8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AA8 from S2C, [Save to disk]
    • View 6AA8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6AA8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6aa8_D] [6aa8_F] [6aa8_A] [6aa8_B] [6aa8_C] [6aa8_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6AA8
  • Community annotation for 6AA8 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science