6AC0 Signaling Protein date Jul 24, 2018
title Crystal Structure Of Tradd Death Domain Glcnacylated By Epec Nleb
authors J.Ding, F.Shao
compound source
Molecule: Tumor Necrosis Factor Receptor Type 1-Associated Domain Protein;
Chain: A
Synonym: Tnfr1-Associated Death Domain Protein,Tnfrsf1a-Ass Via Death Domain;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tradd
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pgex6p
symmetry Space Group: P 41 21 2
R_factor 0.184 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.600 28.600 264.720 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and Functional Insights into Host Death Domains Inactivation by the Bacterial Arginine GlcNAcyltransferase Effector., Ding J, Pan X, Du L, Yao Q, Xue J, Yao H, Wang DC, Li S, Shao F, Mol Cell. 2019 Apr 3. pii: S1097-2765(19)30232-1. doi:, 10.1016/j.molcel.2019.03.028. PMID:30979585
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk]
  • Biological Unit Coordinates (6ac0.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 6AC0
  • CSU: Contacts of Structural Units for 6AC0
  • Structure Factors (242 Kb)
  • Retrieve 6AC0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AC0 from S2C, [Save to disk]
    • View 6AC0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6AC0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ac0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6AC0
  • Community annotation for 6AC0 at PDBWiki (http://pdbwiki.org)

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