6ACO Hydrolase date Jul 26, 2018
title Histone Lysine Desuccinylase Sirt5 In Complex With Succinyl H2bk120
authors T.R.Hang, W.B.Chen
compound source
Molecule: Nad-Dependent Protein Deacylase Sirtuin-5, Mitoch
Chain: A
Fragment: Unp Residues 34-302
Synonym: Histone Lysine Desuccinylase Sirt5
Ec: 3.5.1.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sirt5
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Succinyl Peptide H2bk120
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.161 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.885 64.877 55.564 90.00 95.92 90.00
method X-Ray Diffractionresolution 1.71 Å
ligand CL, GOL, SLL, ZN enzyme Hydrolase E.C.3.5.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (6aco.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 6ACO
  • CSU: Contacts of Structural Units for 6ACO
  • Structure Factors (670 Kb)
  • Retrieve 6ACO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ACO from S2C, [Save to disk]
    • View 6ACO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6ACO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6aco_A] [6aco_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6ACO
  • Community annotation for 6ACO at PDBWiki (http://pdbwiki.org)

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