6AGF Membrane Protein date Aug 11, 2018
title Structure Of The Human Voltage-Gated Sodium Channel Nav1.4 I With Beta1
authors X.J.Pan, Z.Q.Li, Q.Zhou, H.Z.Shen, K.Wu, X.S.Huang, J.F.Chen, J.R.Z X.C.Zhu, J.L.Lei, W.Xiong, H.P.Gong, B.L.Xiao, N.Yan
compound source
Molecule: Sodium Channel Protein Type 4 Subunit Alpha
Chain: A
Synonym: Skm1,Sodium Channel Protein Skeletal Muscle Subuni Sodium Channel Protein Type Iv Subunit Alpha,Voltage-Gated Channel Subunit Alpha Nav1.4;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Scn4a
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Sodium Channel Subunit Beta-1
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Scn1b
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.20 Å


Primary referenceStructure of the human voltage-gated sodium channel Nav1.4 in complex with beta1., Pan X, Li Z, Zhou Q, Shen H, Wu K, Huang X, Chen J, Zhang J, Zhu X, Lei J, Xiong W, Gong H, Xiao B, Yan N, Science. 2018 Sep 6. pii: science.aau2486. doi: 10.1126/science.aau2486. PMID:30190309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (206 Kb) [Save to disk]
  • Biological Unit Coordinates (6agf.pdb1.gz) 196 Kb
  • CSU: Contacts of Structural Units for 6AGF
  • Retrieve 6AGF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AGF from S2C, [Save to disk]
  • View 6AGF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AGF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6agf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6agf_B] [6agf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AGF
  • Community annotation for 6AGF at PDBWiki (http://pdbwiki.org)

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