6AHU Hydrolase Rna date Aug 20, 2018
title Cryo-Em Structure Of Human Ribonuclease P With Mature Trna
authors J.Wu, S.Niu, M.Tan, P.Lan, M.Lei
compound source
Molecule: H1 Rna
Chain: A
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Cell

Molecule: Ribonucleases Pmrp Protein Subunit Pop1
Chain: B
Synonym: Hpop1
Ec: 3.1.26.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Cell

Molecule: Ribonuclease P Protein Subunit P38
Chain: C
Synonym: Rnasep Protein P38
Ec: 3.1.26.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Cell

Molecule: Ribonuclease P Protein Subunit P29
Chain: D
Synonym: Hpop4
Ec: 3.1.26.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Cell

Molecule: Ribonuclease Pmrp Protein Subunit Pop5
Chain: E
Synonym: Hpop5
Ec: 3.1.26.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Cell

Molecule: Ribonuclease P Protein Subunit P25
Chain: F
Synonym: Rnase P Protein Subunit P25
Ec: 3.1.26.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Cell

Molecule: Ribonuclease P Protein Subunit P20
Chain: G
Synonym: Rnasep Protein P20,Ribonucleases Pmrp Protein Sub Homolog,Hpop7;
Ec: 3.1.26.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Cell

Molecule: Ribonuclease P Protein Subunit P14
Chain: H
Ec: 3.1.26.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Cell

Molecule: Ribonuclease P Protein Subunit P30
Chain: I, J
Synonym: Rnasep Protein P30,Rnase P Subunit 2
Ec: 3.1.26.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Cell

Molecule: Ribonuclease P Protein Subunit P21
Chain: K
Synonym: Rnasep Protein P21,Ribonuclease Pmrp 21 Kda Subun Ribonucleoprotein V;
Ec: 3.1.26.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Cell

Molecule: Ribonuclease P Protein Subunit P40
Chain: L
Synonym: Rnasep Protein P40,Rnase P Subunit 1
Ec: 3.1.26.5

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Cell

Molecule: Trna
Chain: T
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pglms
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.66 Å
ligand
enzyme Hydrolase E.C.3.1.26.5 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B
  • ribonuclease MRP activity
  • ribonuclease P activity


  • C
  • ribonuclease P activity


  • D
  • ribonuclease MRP activity
  • ribonuclease P activity
  • ribonuclease activity


  • E
  • ribonuclease P activity
  • ribonuclease activity


  • F
  • ribonuclease P activity


  • G
  • ribonuclease P activity


  • H
  • ribonuclease P activity
  • ribonuclease activity


  • J, I
  • ribonuclease P activity
  • ribonuclease activity


  • K
  • ribonuclease P activity


  • L
  • ribonuclease P activity


  • Primary referenceCryo-EM Structure of the Human Ribonuclease P Holoenzyme., Wu J, Niu S, Tan M, Huang C, Li M, Song Y, Wang Q, Chen J, Shi S, Lan P, Lei M, Cell. 2018 Nov 15;175(5):1393-1404.e11. doi: 10.1016/j.cell.2018.10.003. Epub, 2018 Oct 25. PMID:30454648
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (533 Kb) [Save to disk]
  • Biological Unit Coordinates (6ahu.pdb1.gz) 525 Kb
  • CSU: Contacts of Structural Units for 6AHU
  • Retrieve 6AHU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AHU from S2C, [Save to disk]
  • View 6AHU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AHU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ahu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ahu_F] [6ahu_D] [6ahu_K] [6ahu_L] [6ahu_B] [6ahu_G] [6ahu_C] [6ahu_A] [6ahu_J] [6ahu_H] [6ahu_E] [6ahu_T] [6ahu_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AHU
  • Community annotation for 6AHU at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science