6AJL Signaling Protein date Aug 28, 2018
title Dock7 Mutant I1836y Complexed With Cdc42
authors M.Kukimoto-Niino, M.Shirouzu
compound source
Molecule: Dedicator Of Cytokinesis Protein 7
Chain: A, C, E, G
Engineered: Yes
Mutation: Yes
Other_details: Sf File Contains Friedel Pairs.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dock7, Kiaa1771
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693

Molecule: Cell Division Control Protein 42 Homolog
Chain: B, D, F, H
Synonym: G25k Gtp-Binding Protein
Engineered: Yes
Mutation: Yes
Other_details: Sf File Contains Friedel Pairs.

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdc42
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
symmetry Space Group: P 21 21 2
R_factor 0.185 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
194.550 105.290 117.890 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.23 Å
Gene
Ontology
ChainFunctionProcessComponent
A, E, C, G


F, B, H, D
  • ubiquitin protein ligase act...


  • Primary referenceStructural Basis for the Dual Substrate Specificity of DOCK7 Guanine Nucleotide Exchange Factor., Kukimoto-Niino M, Tsuda K, Ihara K, Mishima-Tsumagari C, Honda K, Ohsawa N, Shirouzu M, Structure. 2019 Feb 16. pii: S0969-2126(19)30045-0. doi:, 10.1016/j.str.2019.02.001. PMID:30853411
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (624 Kb) [Save to disk]
  • Biological Unit Coordinates (6ajl.pdb1.gz) 156 Kb
  • Biological Unit Coordinates (6ajl.pdb2.gz) 157 Kb
  • Biological Unit Coordinates (6ajl.pdb3.gz) 160 Kb
  • Biological Unit Coordinates (6ajl.pdb4.gz) 158 Kb
  • CSU: Contacts of Structural Units for 6AJL
  • Structure Factors (898 Kb)
  • Retrieve 6AJL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AJL from S2C, [Save to disk]
  • View 6AJL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AJL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ajl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ajl_A] [6ajl_E] [6ajl_C] [6ajl_H] [6ajl_B] [6ajl_G] [6ajl_D] [6ajl_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AJL
  • Community annotation for 6AJL at PDBWiki (http://pdbwiki.org)

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