6AKO Dna Binding Protein Dna date Sep 03, 2018
title Crystal Structure Of Foxc2 Dbd Bound To Dbe2 Dna
authors X.Chen, H.Wei, J.Li, X.Liang, S.Dai, L.Jiang, M.Guo, Y.Chen
compound source
Molecule: Dna (5'-D(Cpapapapaptpgptpapapapcpap 3');
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Tpcptptpgptptptpapcpaptptp 3');
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Forkhead Box Protein C2
Chain: C
Synonym: Forkhead-Related Protein Fkhl14,Mesenchyme Fork He 1,Mfh-1 Protein,Transcription Factor Fkh-14;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Foxc2, Fkhl14, Mfh1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.228 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.540 72.924 99.047 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
C


Primary referenceStructural basis for DNA recognition by FOXC2., Chen X, Wei H, Li J, Liang X, Dai S, Jiang L, Guo M, Qu L, Chen Z, Chen L, Chen Y, Nucleic Acids Res. 2019 Feb 5. pii: 5306577. doi: 10.1093/nar/gkz077. PMID:30722065
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (6ako.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 6AKO
  • CSU: Contacts of Structural Units for 6AKO
  • Structure Factors (311 Kb)
  • Retrieve 6AKO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AKO from S2C, [Save to disk]
  • View 6AKO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AKO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ako_B] [6ako_A] [6ako_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AKO
  • Community annotation for 6AKO at PDBWiki (http://pdbwiki.org)

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