6ALD	Lyase	date	Dec 23, 1998
title	Rabbit Muscle Aldolase Afructose-1,6-Bisphosphate Complex
authors	K.H.Choi, A.S.Mazurkie, A.J.Morris, D.Utheza, D.R.Tolan, K.N.Alle
compound		source
Molecule: Fructose-1,6-Bis(Phosphate) Aldolase Chain: A, B, C, D Synonym: D-Fructose 1,6-Bis(Phosphate) D-Glyceraldehyde 3-P Lyase; Ec: 4.1.2.13 Engineered: Yes Mutation: Yes		Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 Tissue: Muscle Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5alpha Expression_system_collection: Atcc 77473 Expression_system_cellular_location: Cytoplasm Expression_system_vector_type: Plasmid Expression_system_plasmid: Ppb1
symmetry	Space Group: P 1 21 1	R_factor 0.228 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 82.800 100.600 84.500 90.00 98.30 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	2FP	enzyme	Lyase E.C.4.1.2.13 BRENDA
related structures	by homologous chain: 1EWD, 1EX5
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structure of a fructose-1,6-bis(phosphate) aldolase liganded to its natural substrate in a cleavage-defective mutant at 2.3 A(,)., Choi KH, Mazurkie AS, Morris AJ, Utheza D, Tolan DR, Allen KN, Biochemistry 1999 Sep 28;38(39):12655-64. PMID:10504235

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk] Biological Unit Coordinates (6ald.pdb1.gz) 214 Kb LPC: Ligand-Protein Contacts for 6ALD CSU: Contacts of Structural Units for 6ALD Likely Quarternary Molecular Structure file(s) for 6ALD Structure Factors (497 Kb) Retrieve 6ALD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 6ALD from S2C, [Save to disk] Re-refined 6ald structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 6ALD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 6ALD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 6ALD, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d6alda_, region A [Jmol] [rasmolscript] [script source]     - Domain d6aldb_, region B [Jmol] [rasmolscript] [script source]     - Domain d6aldc_, region C [Jmol] [rasmolscript] [script source]     - Domain d6aldd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6ald_A] [6ald_D] [6ald_B] [6ald_C] [6ald] SWISS-PROT database: [P00883] Domain organization of [ALDOA_RABIT] by SWISSPFAM

Other resources with information on 6ALD

Community annotation for 6ALD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---