1EWD Lyase date Apr 25, 2000
title Fructose 1,6-Bisphosphate Aldolase From Rabbit Muscle
authors A.Maurady, J.Sygusch
compound source
Molecule: Fructose 1,6-Bisphosphate Aldolase
Chain: A, B, C, D
Ec: 4.1.2.13
Engineered: Yes
Mutation: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Skeletal Muscle
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alphamcr
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppb1
symmetry Space Group: P 1 21 1
R_factor 0.170 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
164.194 57.575 85.349 90.00 102.66 90.00
method X-Ray Diffractionresolution 2.46 Å
ligand
enzyme Lyase E.C.4.1.2.13 BRENDA
related structures by homologous chain: 1QO5, 6ALD
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA conserved glutamate residue exhibits multifunctional catalytic roles in D-fructose-1,6-bisphosphate aldolases., Maurady A, Zdanov A, de Moissac D, Beaudry D, Sygusch J, J Biol Chem 2002 Mar 15;277(11):9474-83. Epub 2002 Jan 4. PMID:11779856
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (1ewd.pdb1.gz) 258 Kb
  • CSU: Contacts of Structural Units for 1EWD
  • Likely Quarternary Molecular Structure file(s) for 1EWD
  • Structure Factors (315 Kb)
  • Retrieve 1EWD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EWD from S2C, [Save to disk]
  • Re-refined 1ewd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EWD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EWD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EWD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ewda_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ewdb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ewdc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1ewdd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ewd_B] [1ewd_D] [1ewd_C] [1ewd_A] [1ewd]
  • SWISS-PROT database: [P00883]
  • Domain organization of [ALDOA_RABIT] by SWISSPFAM
  • Other resources with information on 1EWD
  • Community annotation for 1EWD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1EWD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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