1QO5	Lyase	date	Nov 03, 1999
title	Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
authors	A.R.Dalby, J.A.Littlechild
compound		source
Molecule: Fructose-Bisphosphate Aldolase B Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R; Synonym: Liver-Type Aldolase Ec: 4.1.2.13 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Liver Cellular_location: Cytoplasm Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.224 R_Free 0.276
crystal cell	length a length b length c angle alpha angle beta angle gamma 291.100 489.840 103.360 90.00 103.68 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	SO4	enzyme	Lyase E.C.4.1.2.13 BRENDA
related structures	by homologous chain: 1EWD, 1EWE
Gene Ontology	Chain Function Process Component F, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G fructose-bisphosphate aldola... protein binding cytoskeletal protein binding... lyase activity identical protein binding ATPase binding fructose binding carbohydrate metabolic proce... fructose metabolic process fructose catabolic process glucose metabolic process gluconeogenesis glycolysis NADH oxidation fructose 1,6-bisphosphate me... positive regulation of ATPas... small molecule metabolic pro... vacuolar proton-transporting... microtubule organizing cente... cytosol centriolar satellite
Primary reference	The structure of human liver fructose-1,6-bisphosphate aldolase., Dalby AR, Tolan DR, Littlechild JA, Acta Crystallogr D Biol Crystallogr. 2001 Nov;57(Pt 11):1526-33. Epub 2001, Oct 25. PMID:11679716

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1001 Kb) [Save to disk] Biological Unit Coordinates (1qo5.pdb1.gz) 229 Kb Biological Unit Coordinates (1qo5.pdb2.gz) 231 Kb Biological Unit Coordinates (1qo5.pdb3.gz) 227 Kb Biological Unit Coordinates (1qo5.pdb4.gz) 230 Kb Biological Unit Coordinates (1qo5.pdb5.gz) 227 Kb LPC: Ligand-Protein Contacts for 1QO5 CSU: Contacts of Structural Units for 1QO5 Likely Quarternary Molecular Structure file(s) for 1QO5 Retrieve 1QO5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1QO5 from S2C, [Save to disk]

View 1QO5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 1QO5

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1QO5, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1qo5a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1qo5b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1qo5c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1qo5d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1qo5e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1qo5f_, region F [Jmol] [rasmolscript] [script source]     - Domain d1qo5g_, region G [Jmol] [rasmolscript] [script source]     - Domain d1qo5h_, region H [Jmol] [rasmolscript] [script source]     - Domain d1qo5i_, region I [Jmol] [rasmolscript] [script source]     - Domain d1qo5j_, region J [Jmol] [rasmolscript] [script source]     - Domain d1qo5k_, region K [Jmol] [rasmolscript] [script source]     - Domain d1qo5l_, region L [Jmol] [rasmolscript] [script source]     - Domain d1qo5m_, region M [Jmol] [rasmolscript] [script source]     - Domain d1qo5n_, region N [Jmol] [rasmolscript] [script source]     - Domain d1qo5o_, region O [Jmol] [rasmolscript] [script source]     - Domain d1qo5p_, region P [Jmol] [rasmolscript] [script source]     - Domain d1qo5q_, region Q [Jmol] [rasmolscript] [script source]     - Domain d1qo5r_, region R [Jmol] [rasmolscript] [script source] Fold representative 1qo5 from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1qo5_A] [1qo5_B] [1qo5_C] [1qo5_D] [1qo5_E] [1qo5_F] [1qo5_G] [1qo5_H] [1qo5_I] [1qo5_J] [1qo5_K] [1qo5_L] [1qo5_M] [1qo5_N] [1qo5_O] [1qo5_P] [1qo5_Q] [1qo5_R] SWISS-PROT database: [P05062] Domain organization of [ALDOB_HUMAN] by SWISSPFAM Alignments of the sequence of 1QO5 with the sequences similar proteins can be viewed for 1QO5's classification [ALDOB_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [ALDOB_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 1QO5

Community annotation for 1QO5 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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