1QO5 Lyase date Nov 03, 1999
title Fructose 1,6-Bisphosphate Aldolase From Human Liver Tissue
authors A.R.Dalby, J.A.Littlechild
compound source
Molecule: Fructose-Bisphosphate Aldolase B
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R;
Synonym: Liver-Type Aldolase
Ec: 4.1.2.13
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Liver
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.224 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
291.100 489.840 103.360 90.00 103.68 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand SO4 enzyme Lyase E.C.4.1.2.13 BRENDA
related structures by homologous chain: 1EWD, 1EWE
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G


Primary referenceThe structure of human liver fructose-1,6-bisphosphate aldolase., Dalby AR, Tolan DR, Littlechild JA, Acta Crystallogr D Biol Crystallogr. 2001 Nov;57(Pt 11):1526-33. Epub 2001, Oct 25. PMID:11679716
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1001 Kb) [Save to disk]
  • Biological Unit Coordinates (1qo5.pdb1.gz) 229 Kb
  • Biological Unit Coordinates (1qo5.pdb2.gz) 231 Kb
  • Biological Unit Coordinates (1qo5.pdb3.gz) 227 Kb
  • Biological Unit Coordinates (1qo5.pdb4.gz) 230 Kb
  • Biological Unit Coordinates (1qo5.pdb5.gz) 227 Kb
  • LPC: Ligand-Protein Contacts for 1QO5
  • CSU: Contacts of Structural Units for 1QO5
  • Likely Quarternary Molecular Structure file(s) for 1QO5
  • Retrieve 1QO5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QO5 from S2C, [Save to disk]
  • View 1QO5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QO5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1QO5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qo5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qo5b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1qo5c_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1qo5d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1qo5e_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1qo5f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1qo5g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1qo5h_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1qo5i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1qo5j_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1qo5k_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1qo5l_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1qo5m_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1qo5n_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1qo5o_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1qo5p_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1qo5q_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1qo5r_, region R [Jmol] [rasmolscript] [script source]
  • Fold representative 1qo5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qo5_B] [1qo5_D] [1qo5_A] [1qo5] [1qo5_N] [1qo5_O] [1qo5_Q] [1qo5_F] [1qo5_I] [1qo5_H] [1qo5_R] [1qo5_K] [1qo5_C] [1qo5_E] [1qo5_J] [1qo5_G] [1qo5_M] [1qo5_L] [1qo5_P]
  • SWISS-PROT database: [P05062]
  • Domain organization of [ALDOB_HUMAN] by SWISSPFAM
  • Other resources with information on 1QO5
  • Community annotation for 1QO5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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