6ALJ Oxidoreductase Oxidoreductase Inhibitor date Aug 08, 2017
title Aldh1a2 Liganded With Nad And Compound Win18,446
authors Y.Chen, J.Y.Zhu, E.Schonbrunn
compound source
Molecule: Aldehyde Dehydrogenase 1a2
Chain: A, B, C, D
Fragment: Unp Residues 26-518
Synonym: Retinal Dehydrogenase 2, Raldh2, Aldehyde Dehydrog Family 1 Member A2, Retinaldehyde-Specific Dehydrogenase Ty Raldh(II);
Ec: 1.2.1.36
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aldh1a2, Raldh2
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21star (De3)
symmetry Space Group: P 1 21 1
R_factor 0.137 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.960 139.820 84.900 90.00 94.07 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand
enzyme Oxidoreductase E.C.1.2.1.36 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural Basis of ALDH1A2 Inhibition by Irreversible and Reversible Small Molecule Inhibitors., Chen Y, Zhu JY, Hong KH, Mikles DC, Georg GI, Goldstein AS, Amory JK, Schonbrunn E, ACS Chem Biol. 2018 Jan 3. doi: 10.1021/acschembio.7b00685. PMID:29240402
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (360 Kb) [Save to disk]
  • Biological Unit Coordinates (6alj.pdb1.gz) 352 Kb
  • CSU: Contacts of Structural Units for 6ALJ
  • Structure Factors (1214 Kb)
  • Retrieve 6ALJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ALJ from S2C, [Save to disk]
  • View 6ALJ in 3D
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ALJ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6alj from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6alj_A] [6alj_C] [6alj_B] [6alj_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ALJ
  • Community annotation for 6ALJ at PDBWiki (http://pdbwiki.org)

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